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Human Protein Atlas Tissue Data (transposed and subsampled)

Source: R/example_adata.R
example_adata.Rd

Human Protein Atlas tissue bulk-RNA expression data in AnnDatR format transposed and subsampled (981 selected genes).

Usage

example_adata

Format

An AnnDatR object with the following structure:

X

A data frame with 78 rows and 982 columns representing the main data matrix (e.g., gene expression values).

obs

A data frame with 981 rows and 11 columns containing metadata for observations (e.g., genes).

obs_names_col

A string specifying the column used for observation names (ensembl_id).

var

A data frame with 78 rows and 7 columns containing metadata for variables (e.g., samples).

var_names_col

A string specifying the column used for variable names (sample_id).

uns

A list for storing unstructured metadata (currently NULL).

obsm

A list for storing multidimensional annotations for observations (currently NULL).

raw

A slot for storing raw data (currently NULL).

Source

https://www.science.org/doi/10.1126/science.1260419

Examples

example_adata
#> AnnDatR object with n_obs x n_vars = 981 x 78
#>     obs: ensembl_id, gene_symbol, chromosome_name, gene_biotype, start_position, end_position, length
#>     var: sample_id, tissue_name, consensus_tissue, organ_name, color, colors_esk, colors_esj